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Research
Latest papers
Shifts in bacterioplankton during cyanobacterial blooms reflect bloom toxicity and lake trophic state.
Harmful algae · 2025 · senior author
Trophic structure modulates community rescue following acidification.
Proceedings. Biological sciences · 2019
An interactional network of genes involved in chitin synthesis in Saccharomyces cerevisiae.
BMC genetics · 2005
Latest funding
- $1,289,026
Evolutionary trade-ups and trade-offs between phage and antibiotic resistance in cholera patients
CIHR · 2026 · Nominated PI
- $120,000
Transmission and adaptation of SARS-CoV-2 across different hosts and environments
CIHR · 2024 · Supervisor
- $105,000
Metagenomic analyses to understand transmission dynamics of carbapenem resistant bacteria within hospital settings
CIHR · 2023 · Supervisor
3 publications.
Shifts in bacterioplankton during cyanobacterial blooms reflect bloom toxicity and lake trophic state.
Jansen L, Tromas N, Strecker A, Shapiro J
Trophic structure modulates community rescue following acidification.
Bell G, Fugère V, Barrett R, Beisner B, Cristescu M, Fussmann G, Shapiro J, Gonzalez A
An interactional network of genes involved in chitin synthesis in Saccharomyces cerevisiae.
Lesage G, Shapiro J, Specht CA, Sdicu AM, Ménard P, Hussein S, Tong AH, Boone C, Bussey H
Evolutionary trade-ups and trade-offs between phage and antibiotic resistance in cholera patients
Principal investigators: Shapiro, Jesse
Keywords: Antibiotic Resistance; Cholera; Computational Biology; Diagnostics; Enteric Pathogens; Evolution; Genomics; Metagenomics; Phage; Predictive Modelling
Transmission and adaptation of SARS-CoV-2 across different hosts and environments
Principal investigators: Naderi, Sana
Keywords: Bioinformatics; Genomic Epidemiology; Infectious Disease; Population Genetics; Viral Genomics; Virology
Metagenomic analyses to understand transmission dynamics of carbapenem resistant bacteria within hospital settings
Principal investigators: Cella, Monica
Keywords: Antimicrobial Resistance; Bacterial Genomics; Bacterial Infections; Carbapenem Resistance; Gram Negative Bacteria; Horizontal Gene Transfer; Hospital Environments; Metagenomic Analyses; Sequencing; Spatio-Temporal Modeling
A Genome-Wide Approach for Restoring Antibiotic Susceptibility to Drug-Resistant Mycobacterium tuberculosis.
Principal investigators: Reed, Michael B
Keywords: Antimicrobial Resistance; Bacterial Genetics; Bioinformatics; Drug Screening; Genomics; Medicinal Chemistry; Molecular Microbiology; Mycobacterium Tuberculosis; Tuberculosis
Understanding the genetic factors for Vibrio cholerae virulence
Principal investigators: Lypaczewski, Patrick
Keywords: Cholera; Genomics; Human Pathogen; Metagenomics; Sequencing; Virulence
Viral diversity and immune escape variants in vulnerable individuals post-vaccination.
Principal investigators: Piccirillo, Ciriaco A
Keywords: Computational Biology; Hematological Malignancies; Immune Escape Variants; Immunosenescence; Mutations; Serology; T Cells; Vaccines; Viral Genomics; Viral Transmission
Impacts of human and bacterial natural genomic diversity on cholera disease severity
Principal investigators: Shapiro, Jesse
Keywords: Cholera; Evolutionary Genomics; Genome-Wide Association Study (Gwas); Genomic Epidemiology; Infectious Disease; Metagenomics; Microbiome; Population Genetics; Virulence; Within-Patient Evolution
From CIHR, NSERC and SSHRC funding decisions: CIHR since 2008, NSERC since 1991 and SSHRC since 1998, including their latest published competition results.
Frequent collaborators
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