Faculty profile
Marie Brunet
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Latest papers
Perspectives in computational mass spectrometry: recent developments and key challenges.
Bioinformatics advances · 2025
Stool-Based Proteomic Signature for the Noninvasive Classification of Crohn's Disease and Ulcerative Colitis Using Machine Learning.
Clinical and translational gastroenterology · 2025
Discovery of diverse chimeric peptides in a eukaryotic proteome sets the stage for experimental validation of the mosaic translation hypothesis.
Computational and structural biotechnology journal · 2025
Latest funding
- $2,399,873
Cannabis Exposure from Pregnancy to Early Childhood: A Family-Triad Brain Health Program CAN-B+FAM
CIHR · 2026 · Principal investigator
- $581,400
Osteoclast-Related Cells as Biomarkers for Bone Homeostasis in Osteoporosis
CIHR · 2025 · Co-investigator
- $142,374
Informatic infrastructure to foster omics discoveries and innovations
NSERC · 2024 · Principal investigator
5 publications.
Perspectives in computational mass spectrometry: recent developments and key challenges.
Sachsenberg T, Pino LK, Brunet M, Bludau I, Kohlbacher O, Vizcaino JA, Bittremieux W
Stool-Based Proteomic Signature for the Noninvasive Classification of Crohn's Disease and Ulcerative Colitis Using Machine Learning.
Shajari E, Gagné D, Bourassa F, Malick M, Roy P, Noël JF, Gagnon H, Delisle M, Boisvert FM, Brunet M, Beaulieu JF
Discovery of diverse chimeric peptides in a eukaryotic proteome sets the stage for experimental validation of the mosaic translation hypothesis.
Çakır U, Gabed N, Köroğlu YE, Kaya S, Sinharoy S, Benedito VA, Brunet M, Roucou X, Kryvoruchko IS
A small protein coded within the mitochondrial canonical gene nd4 regulates mitochondrial bioenergetics.
Kienzle L, Bettinazzi S, Choquette T, Brunet M, Khorami HH, Jacques JF, Moreau M, Roucou X, Landry CR, Angers A, Breton S
Mosaic translation hypothesis: chimeric polypeptides produced via multiple ribosomal frameshifting as a basis for adaptability.
Çakır U, Gabed N, Brunet M, Roucou X, Kryvoruchko I
Cannabis Exposure from Pregnancy to Early Childhood: A Family-Triad Brain Health Program CAN-B+FAM
Principal investigators: Ouellet, Annie; Auray-Blais, Christiane; Boucoiran, Isabelle; Brodeur, Magaly; Brunet, Marie A; Carpentier, André C; Jacques, Pierre-Étienne; Lane, Julie; Lariviere, Sara; Lemelin, Jean-Pascal; Lodygensky, Gregory A; Nazif-Munoz, Jose I; Pascuzzo, Katherine; Sarret, Philippe; Therriault, Danyka; Whittingstall, Kevin S
Keywords: Biobank; Brain; Cannabis; Family; Genomics; Neurobehavior; Neurodevelopment; Neuroimaging; Pregnancy; Psychosocial Functionning
Osteoclast-Related Cells as Biomarkers for Bone Homeostasis in Osteoporosis
Principal investigators: Roux, Sophie
Keywords: Autophagy; Denosumab (Anti-Rankl); Flow Cytometry; Osteoclast Precursors; Osteoclast Recycling; Osteomorphs; Osteoporosis; Pbmcs; Prediction Model; Scrnaseq
Informatic infrastructure to foster omics discoveries and innovations
Principal investigators: Brunet, Marie
Keywords: Bioinformatics; Computational biology; Deep Learning; Genome evolution; Genomics; Proteomics; Transcriptomics
Evolutionary and Functional Dynamics of Cytochrome P450 Genes and Pseudogenes
Principal investigators: Hussin, Julie JVVC
Keywords: bioinformatics; Cytochrome p450; epistasis; human genomics; multi-omics; phylogeny; plant genomics; population genetics; primate genomics; pseudogenes
Pseudogenization: the overlooked recycling centre of coding DNA
Principal investigators: Brunet, Marie
Keywords: Coding potential; Functional genomics; Functional proteomics; Gene evolution; Genome annotation; Machine learning; Pseudogene
Pseudogenization: the overlooked recycling centre of coding DNA
Principal investigators: Brunet, Marie
Developing a real-time proteogenomics pipeline
Principal investigators: Brunet, Marie
HeLTI cooperative research project: A Multifaceted Maternal-Child Health Intervention Cohort Study for the prevention of childhood obesity
Principal investigators: Baillargeon, Jean-Patrice; Zhu, Guowei; Booij, Linda; Bouchard, Luigi; Fan, Jianxia; Fraser, William D; Marc, Isabelle; Masse, Louise C; Van Hulst, Andraea
Keywords: Childhood Obesity; Childhoor Obesity Prevention; Cohort Studies; Community Based Intervention; Developmental Origins Of Health And Disease,; Epigenetic Mechanisms; Metabolic Syndrome,; Microbiome,; Randomized Clinical Trial; Sex And Gender
Challenging the dogmas of monocistronic genes and pseudogenes using proteogenomics and systems biology approaches to better define the human proteome in health and diseases
Principal investigators: Roucou, Xavier
Keywords: Alternative Translation; Bioinformatics; Functional Proteomics; Genome Annotations; Open Reading Frame; Protein Networks
From CIHR, NSERC and SSHRC funding decisions: CIHR since 2008, NSERC since 1991 and SSHRC since 1998, including their latest published competition results.
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