Faculty profile
Fiona Brinkman
Back to facultyThis profile is built from public research funding records (CIHR, NSERC and SSHRC) and PubMed. We have not imported them from a Simon Fraser University directory, so their courses and email address may be missing. Find their university profile.
Research
Latest papers
Canadians' opinions towards COVID-19 data-sharing: a national cross-sectional survey.
BMJ open · 2023
Transcriptome comparison of dengue-susceptible and -resistant field derived strains of Colombian Aedes aegypti using RNA-sequencing.
Memorias do Instituto Oswaldo Cruz · 2021
Eleven High-Quality Reference Genome Sequences and 360 Draft Assemblies of Shiga Toxin-Producing Escherichia coli Isolates from Human, Food, Animal, and Environmental Sources in Canada.
Microbiology resource announcements · 2019
Latest funding
- $5,550,000
The Canadian Bioinformatics, Computational Biology and Health Data Sciences Training and Community Platform (BCBHDS Platform)
CIHR · 2024 · Co-investigator
- $100,000
The Comprehensive Antibiotic Resistance Database: From Genes to Interpretation
CIHR · 2024 · Co-investigator
- $172,000
Predicting bacterial and archaeal protein subcellular localization and accessibility, using computationally and experimentally based criteria
NSERC · 2023 · Principal investigator
7 publications.
Canadians' opinions towards COVID-19 data-sharing: a national cross-sectional survey.
Savic Kallesoe SA, Rabbani T, Gill EE, Brinkman F, Griffiths EJ, Zawati M, Liu H, Palmour N, Joly Y, Hsiao WWL
Transcriptome comparison of dengue-susceptible and -resistant field derived strains of Colombian Aedes aegypti using RNA-sequencing.
Coatsworth H, Caicedo PA, Winsor G, Brinkman F, Ocampo CB, Lowenberger C
Eleven High-Quality Reference Genome Sequences and 360 Draft Assemblies of Shiga Toxin-Producing Escherichia coli Isolates from Human, Food, Animal, and Environmental Sources in Canada.
Tyson S, Peterson CL, Olson A, Tyler S, Knox N, Griffiths E, Dooley D, Hsiao W, Cabral J, Johnson RP, Laing C, Gannon V, Lynch T, Van Domselaar G, Brinkman F, Graham M
SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology.
Petkau A, Mabon P, Sieffert C, Knox NC, Cabral J, Iskander M, Iskander M, Weedmark K, Zaheer R, Katz LS, Nadon C, Reimer A, Taboada E, Beiko RG, Hsiao W, Brinkman F, Graham M, Van Domselaar G
Baseline Practices for the Application of Genomic Data Supporting Regulatory Food Safety.
Lambert D, Pightling A, Griffiths E, Van Domselaar G, Evans P, Berthelet S, Craig D, Chandry PS, Stones R, Brinkman F, Angers-Loustau A, Kreysa J, Tong W, Blais B
From bugs to brains: The microbiome in neurological health.
McKay KA, Kowalec K, Brinkman F, Finlay BB, Horwitz M, Manges AR, Osborne L, Tremlett H
Genes, the environment and personalized medicine
Carlsten C, Brauer M, Brinkman F, Brook J, Daley D, McNagny K, Pui M, Royce D, Takaro T, Denburg J
The Canadian Bioinformatics, Computational Biology and Health Data Sciences Training and Community Platform (BCBHDS Platform)
Principal investigators: Brazas, Michelle D; Bourque, Guillaume; Hsiao, William; Hughes, Nia; Hussin, Julie; Kong, Jude D; Pai, Shraddha; Sukhai, Mahadeo; Wasserman, Wyeth W; Wishart, David S
Keywords: Bioinformatics, Computational Biology & Health Data Science; Championing Diverse Talent And Careers; Competency Based Learning Pathways; Graduates, Post-Graduates And Early Career Researchers; Idea- And Career-Focused Matched Mentorship Guidance; Interdisciplinary, Intersectoral Capacity Building; Local Training Opportunities And Awards; National Community Building Activities; On-Demand, Virtual And In-Person Training; Professional Development Training
The Comprehensive Antibiotic Resistance Database: From Genes to Interpretation
Principal investigators: Mcarthur, Andrew G; Van Domselaar, Gary H
Keywords: Antimicrobial Resistance; Biocuration; Bioinformatics; Biological Databases; Comprehensive Antibiotic Resistance Database; Genome Annotation; Genomic Epidemiology; Predictive Analysis; Resistome; Surveillance
Predicting bacterial and archaeal protein subcellular localization and accessibility, using computationally and experimentally based criteria
Principal investigators: Brinkman, Fiona
Keywords: protein subcellular localization; bacteriology; archaea; bacterial cell surface; bioinformatics; outer membrane proteins; microbial genomics; random mutagenesis; protein structure; protein sorting signals
Coronavirus Variants Rapid Response Network: CoVaRR-Net
Principal investigators: Langlois, Marc-Andre; Brouwers, Melissa C; Flamand, Louis; Gingras, Anne-Claude; Gommerman, Jennifer L; Muhajarine, Nazeem; Ragoussis, Ioannis; Shapiro, Jesse
Keywords: Covarr-Net; Covid-19; Rapid-Response; Sars-Cov-2; Variants Of Concern
Coronavirus Variants Rapid Response Network: CoVaRR-Net - Extension
Principal investigators: Langlois, Marc-Andre; Abraham, Ninan; Behr, Marcel A; Brouwers, Melissa C; Crawley, Angela M; Flamand, Louis; Gingras, Anne-Claude; Gommerman, Jennifer L; Grimshaw, Jeremy M; Hsu, Amy T; Huyser, Kimberly R; Manuel, Douglas G; Muhajarine, Nazeem; Ragoussis, Ioannis; Rasmussen, Angela; Shapiro, Jesse
Keywords: Covarr-Net; Covid-19; Rapid-Response; Sars-Cov-2; Variants Of Concern
Enabling Microbial Genome Analysis for Infectious Disease Outbreak Investigations
Principal investigators: Gray, Kristen L
Keywords: Bioinformatics; Genomic Epidemiology; Genomic Islands; Microbial Genomics; Molecular Biology
Technology, Policy and Implementation: a cross-disciplinary workshop to generate innovative solutions for data sharing in public health genomic epidemiology practice
Principal investigators: Hsiao, William; Krajden, Mel; Van Domselaar, Gary H
Keywords: Artificial Intelligence; Data Governance; Data Sharing; Genomic Epidemiology; Global Health; Implementation Science; Infectious Diseases; Ontology; Public Health; Social And Technological Equity
Novel and robust systems based approaches for the identification and translation of microbiome derived diagnostic and therapeutics
Principal investigators: Langille, Morgan G; Beiko, Robert G; Bielawski, Joseph P; Declercq, Vanessa C; Gloor, Gregory B; Parkinson, John; Van Limbergen, Johan E
Keywords: Bioinformatics; Cancer; Deep Learning; Inflamatory Bowel Disease; Long Read Sequencing; Machine Learning; Metagenomics; Microbiome; Sex And Gender; Statistics
Advancing Antimicrobial Resistance (AMR) Surveillance: Characterizing AMR mobility and improving AMR prediction for microbial metagenomics
Principal investigators: Jia, Baofeng
Keywords: Amr Mobilization; Amr Prediction; Amr Surveillance; Antimicrobial Resistance (Amr); Disease Outbreak; Environmental Amr; Metagenomics; Microbial Research; Public Health; Watershed
IMPACTT: A Microbiome Research Core based on Integrated Microbiome Platforms for Advancing Causation Testing and Translation
Principal investigators: McCoy, Kathy; Arrieta Mendez, Marie-Claire; Brinkman, Fiona S; Danska, Jayne S; Geuking, Markus; Greenwood, Celia M; Gros, Philippe; Harrison, Joe J; Hsiao, William; Kozyrskyj, Anita L; Kubes, Paul; Lewis, Ian A; Madsen, Karen L; Silva, Diego S; Sycuro, Laura K
Keywords: Computational Tools And Analyses; Functional Studies; Gnotobiotic Animal Models; Host-Microbiome Interactions; Human Cohorts; Microbial Repositories; Microbiome; Omics Platforms; Research Core; Standardized Protocols
From CIHR, NSERC and SSHRC funding decisions: CIHR since 2008, NSERC since 1991 and SSHRC since 1998, including their latest published competition results.
Frequent collaborators
- Michael Brauer and Jeffrey Brook: 3 shared papers
- Judah Aryeh Denburg and Michael Brauer: 2 shared papers
- William Hsiao and Fiona Brinkman: 2 shared papers
- Yann Joly and Ma'n Zawati: 2 shared papers
- Judah Aryeh Denburg and Kelly McNagny: 1 shared paper
- Judah Aryeh Denburg and Denise Daley: 1 shared paper
- Judah Aryeh Denburg and Jeffrey Brook: 1 shared paper
- Judah Aryeh Denburg and Fiona Brinkman: 1 shared paper
- Helen Tremlett and Lisa Osborne: 1 shared paper
- Helen Tremlett and William Hsiao: 1 shared paper
- Helen Tremlett and Fiona Brinkman: 1 shared paper
- Helen Tremlett and Marc Horwitz: 1 shared paper
- Kelly McNagny and Denise Daley: 1 shared paper
- Kelly McNagny and Michael Brauer: 1 shared paper
- Kelly McNagny and Jeffrey Brook: 1 shared paper
- Kelly McNagny and Fiona Brinkman: 1 shared paper
- Denise Daley and Michael Brauer: 1 shared paper
- Denise Daley and Fiona Brinkman: 1 shared paper
- Michael Brauer and Fiona Brinkman: 1 shared paper
- Jeffrey Brook and Fiona Brinkman: 1 shared paper
- Lisa Osborne and Fiona Brinkman: 1 shared paper
- Lisa Osborne and Marc Horwitz: 1 shared paper
- Fiona Brinkman and Marc Horwitz: 1 shared paper
- Fiona Brinkman and Yann Joly: 1 shared paper
- Fiona Brinkman and Ma'n Zawati: 1 shared paper
- Medicine
- Microbiology and Immunology
- Molecular Biology and Biochemistry
- Pathology and Laboratory Medicine
- UBC James Hogg Research Centre
- Medicine/Neurology
- Occupational and Environmental Health
- Other
Co-authors at Simon Fraser University, colored by department. Thicker lines mean more shared papers; select anyone to open their profile and their own map.
William Hsiao
Pathology and Laboratory Medicine
2 shared papers, latest 2019
Marc Horwitz
Microbiology and Immunology
1 shared papers, latest 2017
Yann Joly
Faculty
1 shared papers, latest 2023
Ma'n Zawati
Faculty
1 shared papers, latest 2023
Helen Tremlett
Medicine/Neurology
1 shared papers, latest 2017
Kelly McNagny
Biomedical Engineering
1 shared papers, latest 2014
Denise Daley
UBC James Hogg Research Centre
1 shared papers, latest 2014
Judah Aryeh Denburg
Medicine
1 shared papers, latest 2014
Jeffrey Brook
Occupational and Environmental Health
1 shared papers, latest 2014
Lisa Osborne
Microbiology and Immunology
1 shared papers, latest 2017
Michael Brauer
Medicine
1 shared papers, latest 2014
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