Faculty profile
Fiona Brinkman
Back to facultyThis profile is built from public research funding records (CIHR, NSERC and SSHRC) and PubMed. We have not imported them from a Simon Fraser University directory, so their courses and email address may be missing. Find their university profile.
Research
Latest papers
Canadians' opinions towards COVID-19 data-sharing: a national cross-sectional survey.
BMJ open · 2023
Transcriptome comparison of dengue-susceptible and -resistant field derived strains of Colombian Aedes aegypti using RNA-sequencing.
Memorias do Instituto Oswaldo Cruz · 2021
Eleven High-Quality Reference Genome Sequences and 360 Draft Assemblies of Shiga Toxin-Producing Escherichia coli Isolates from Human, Food, Animal, and Environmental Sources in Canada.
Microbiology resource announcements · 2019
Latest funding
- $172,000
Predicting bacterial and archaeal protein subcellular localization and accessibility, using computationally and experimentally based criteria
NSERC · 2023 · Principal investigator
- $105,000
Enabling Microbial Genome Analysis for Infectious Disease Outbreak Investigations
CIHR · 2019 · Supervisor
- $105,000
Advancing Antimicrobial Resistance (AMR) Surveillance: Characterizing AMR mobility and improving AMR prediction for microbial metagenomics
CIHR · 2018 · Supervisor
7 publications.
Canadians' opinions towards COVID-19 data-sharing: a national cross-sectional survey.
Savic Kallesoe SA, Rabbani T, Gill EE, Brinkman F, Griffiths EJ, Zawati M, Liu H, Palmour N, Joly Y, Hsiao WWL
Transcriptome comparison of dengue-susceptible and -resistant field derived strains of Colombian Aedes aegypti using RNA-sequencing.
Coatsworth H, Caicedo PA, Winsor G, Brinkman F, Ocampo CB, Lowenberger C
Eleven High-Quality Reference Genome Sequences and 360 Draft Assemblies of Shiga Toxin-Producing Escherichia coli Isolates from Human, Food, Animal, and Environmental Sources in Canada.
Tyson S, Peterson CL, Olson A, Tyler S, Knox N, Griffiths E, Dooley D, Hsiao W, Cabral J, Johnson RP, Laing C, Gannon V, Lynch T, Van Domselaar G, Brinkman F, Graham M
SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology.
Petkau A, Mabon P, Sieffert C, Knox NC, Cabral J, Iskander M, Iskander M, Weedmark K, Zaheer R, Katz LS, Nadon C, Reimer A, Taboada E, Beiko RG, Hsiao W, Brinkman F, Graham M, Van Domselaar G
Baseline Practices for the Application of Genomic Data Supporting Regulatory Food Safety.
Lambert D, Pightling A, Griffiths E, Van Domselaar G, Evans P, Berthelet S, Craig D, Chandry PS, Stones R, Brinkman F, Angers-Loustau A, Kreysa J, Tong W, Blais B
From bugs to brains: The microbiome in neurological health.
McKay KA, Kowalec K, Brinkman F, Finlay BB, Horwitz M, Manges AR, Osborne L, Tremlett H
Genes, the environment and personalized medicine
Carlsten C, Brauer M, Brinkman F, Brook J, Daley D, McNagny K, Pui M, Royce D, Takaro T, Denburg J
Predicting bacterial and archaeal protein subcellular localization and accessibility, using computationally and experimentally based criteria
Principal investigators: Brinkman, Fiona
Keywords: archaea; bacterial cell surface; bacteriology; bioinformatics; microbial genomics; outer membrane proteins; protein sorting signals; protein structure; protein subcellular localization; random mutagenesis
Enabling Microbial Genome Analysis for Infectious Disease Outbreak Investigations
Principal investigators: Gray, Kristen L
Keywords: Bioinformatics; Genomic Epidemiology; Genomic Islands; Microbial Genomics; Molecular Biology
Advancing Antimicrobial Resistance (AMR) Surveillance: Characterizing AMR mobility and improving AMR prediction for microbial metagenomics
Principal investigators: Jia, Baofeng
Keywords: Amr Mobilization; Amr Prediction; Amr Surveillance; Antimicrobial Resistance (Amr); Disease Outbreak; Environmental Amr; Metagenomics; Microbial Research; Public Health; Watershed
Common Infrastructure for National Cohorts in Europe, Canada, and Africa (CINECA)
Principal investigators: Brinkman, Fiona S; Bourque, Guillaume; Brudno, Michael; Hsiao, William
Keywords: Bioinformatics; Cohort Analyses; Data Federation; Data Harmonization; Data Integration; Data Sharing; Data Standards; Human Genome Data; Ontologies; Precision Medicine
Identifying and characterizing pathogen-associated, conserved hypothetical proteins with potential novel roles in virulence, from over 8000 bacterial genomes
Principal investigators: Lau, Wing Yin Venus
Keywords: Anti-Infective; Big Data; Bioinformatics; Comparative Genomics; Conserved Hypothetical Proteins; Genomic Epidemiology; Microbial Genomics; Virulence Mechanisms
Computationally predicting bacterial and archaeal protein subcellular localization, using experimentally-based criteria
Principal investigators: Brinkman, Fiona
PathOGiST: Calibrated multi-criterion genomic analysis for public health microbiology.
Principal investigators: Chindelevitch, Leonid
Keywords: Bioinformatics
Training Program in High-Dimensional Bioinformatics (HDB)
Principal investigators: Pavlidis, Paul
Digital polymerase chain reaction (PCR) and high-capacity multiplex PCR for next-generation sequencing
Principal investigators: Morin, Ryan
Design and implementation of an application ontology for public health genomic epidemiology
Principal investigators: Courtot, Mélanie
Keywords: Data Standards; Epidemiology; Genomics; Knowledge Representation; Surveillance
From CIHR, NSERC and SSHRC funding decisions: CIHR since 2008, NSERC since 1991 and SSHRC since 1998, including their latest published competition results.
Frequent collaborators
- Michael Brauer and Jeffrey Brook: 3 shared papers
- Judah Aryeh Denburg and Michael Brauer: 2 shared papers
- Fiona Brinkman and Fiona Brinkman: 2 shared papers
- William Hsiao and Fiona Brinkman: 2 shared papers
- Yann Joly and Ma'n Zawati: 2 shared papers
- Judah Aryeh Denburg and Kelly McNagny: 1 shared paper
- Judah Aryeh Denburg and Denise Daley: 1 shared paper
- Judah Aryeh Denburg and Jeffrey Brook: 1 shared paper
- Judah Aryeh Denburg and Fiona Brinkman: 1 shared paper
- Helen Tremlett and Lisa Osborne: 1 shared paper
- Helen Tremlett and William Hsiao: 1 shared paper
- Helen Tremlett and Fiona Brinkman: 1 shared paper
- Helen Tremlett and Marc Horwitz: 1 shared paper
- Kelly McNagny and Denise Daley: 1 shared paper
- Kelly McNagny and Michael Brauer: 1 shared paper
- Kelly McNagny and Jeffrey Brook: 1 shared paper
- Kelly McNagny and Fiona Brinkman: 1 shared paper
- Denise Daley and Michael Brauer: 1 shared paper
- Denise Daley and Fiona Brinkman: 1 shared paper
- Michael Brauer and Fiona Brinkman: 1 shared paper
- Jeffrey Brook and Fiona Brinkman: 1 shared paper
- Fiona Brinkman and William Hsiao: 1 shared paper
- Fiona Brinkman and Yann Joly: 1 shared paper
- Fiona Brinkman and Ma'n Zawati: 1 shared paper
- Lisa Osborne and Fiona Brinkman: 1 shared paper
- Lisa Osborne and Marc Horwitz: 1 shared paper
- Fiona Brinkman and Marc Horwitz: 1 shared paper
- Fiona Brinkman and Yann Joly: 1 shared paper
- Fiona Brinkman and Ma'n Zawati: 1 shared paper
- Medicine
- Microbiology and Immunology
- Molecular Biology and Biochemistry
- Pathology and Laboratory Medicine
- UBC James Hogg Research Centre
- Medicine/Neurology
- Occupational and Environmental Health
- Other
Co-authors at Simon Fraser University, colored by department. Thicker lines mean more shared papers; select anyone to open their profile and their own map.
Fiona Brinkman
Medicine
2 shared papers, latest 2023
William Hsiao
Pathology and Laboratory Medicine
2 shared papers, latest 2019
Marc Horwitz
Microbiology and Immunology
1 shared papers, latest 2017
Yann Joly
Faculty
1 shared papers, latest 2023
Ma'n Zawati
Faculty
1 shared papers, latest 2023
Kelly McNagny
Biomedical Engineering
1 shared papers, latest 2014
Denise Daley
UBC James Hogg Research Centre
1 shared papers, latest 2014
Judah Aryeh Denburg
Medicine
1 shared papers, latest 2014
Jeffrey Brook
Occupational and Environmental Health
1 shared papers, latest 2014
Lisa Osborne
Microbiology and Immunology
1 shared papers, latest 2017
Michael Brauer
Medicine
1 shared papers, latest 2014
Helen Tremlett
Medicine/Neurology
1 shared papers, latest 2017
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