Research
Read how they describe their research on their Simon Fraser University profile.
Latest papers
AMRColab - a user-friendly antimicrobial resistance detection and visualization tool.
Microbial genomics · 2024
CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database
Nucleic Acids Research (NAR) · 2023
Putting everything in its place: using the INSDC compliant Pathogen Data Object Model to better structure genomic data submitted for public health applications.
Microbial genomics · 2023 · senior author
Latest funding
- $898,876
Smarter integrated pathogen genomics ecosystems for threat detection and risk assessment
CIHR · 2025 · Co-investigator
- $100,000
The Comprehensive Antibiotic Resistance Database: From Genes to Interpretation
CIHR · 2024 · Co-investigator
- $5,550,000
The Canadian Bioinformatics, Computational Biology and Health Data Sciences Training and Community Platform (BCBHDS Platform)
CIHR · 2024 · Co-investigator
8 publications.
AMRColab - a user-friendly antimicrobial resistance detection and visualization tool.
Lam SD, Di Gregorio S, Ang MY, Griffiths E, Jamaluddin TZMT, Nathan S, Neoh HM
CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database
Alcock BP, Huynh W, Chalil R, Smith KW, Raphenya AR, Wlodarski MA, Edalatmand A, Petkau A, Syed SA, Tsang KK
Putting everything in its place: using the INSDC compliant Pathogen Data Object Model to better structure genomic data submitted for public health applications.
Timme RE, Karsch-Mizrachi I, Waheed Z, Arita M, MacCannell D, Maguire F, Petit Iii R, Page AJ, Mendes CI, Nasar MI, Oluniyi P, Tyler AD, Raphenya AR, Guthrie JL, Olawoye I, Rinck G, O'Cathail C, Lees J, Cochrane G, Cummins C, Brister JR, Klimke W, Feldgarden M, Griffiths E
A Schema for Digitized Surface Swab Site Metadata in Open-Source DNA Sequence Databases.
Feng J, Daeschel D, Dooley D, Griffiths E, Allard M, Timme R, Chen Y, Snyder AB
CARD 2020: antibiotic resistome surveillance with the comprehensive antibiotic resistance database
Alcock BP, Raphenya AR, Lau TTY, Tsang KK, Bouchard M, Edalatmand A, Huynh W, Nguyen A-LV, Cheng AA, Liu S
Eleven High-Quality Reference Genome Sequences and 360 Draft Assemblies of Shiga Toxin-Producing Escherichia coli Isolates from Human, Food, Animal, and Environmental Sources in Canada.
Tyson S, Peterson CL, Olson A, Tyler S, Knox N, Griffiths E, Dooley D, Hsiao W, Cabral J, Johnson RP, Laing C, Gannon V, Lynch T, Van Domselaar G, Brinkman F, Graham M
Context Is Everything: Harmonization of Critical Food Microbiology Descriptors and Metadata for Improved Food Safety and Surveillance
Emma Griffiths, Damion Dooley, Morag Graham, Gary Van Domselaar, Fiona S. L. Brinkman, William Hsiao
Baseline Practices for the Application of Genomic Data Supporting Regulatory Food Safety.
Lambert D, Pightling A, Griffiths E, Van Domselaar G, Evans P, Berthelet S, Craig D, Chandry PS, Stones R, Brinkman F, Angers-Loustau A, Kreysa J, Tong W, Blais B
Smarter integrated pathogen genomics ecosystems for threat detection and risk assessment
Principal investigators: Hsiao, William
Keywords: Antimicrobial Resistance; Data Curation; Data Modelling; Knowledge Mobilization; Microbial Genomics; One Health; Ontology Development; Pathogen Surveillance; Public Health Data Sharing; Risk Assessment
The Comprehensive Antibiotic Resistance Database: From Genes to Interpretation
Principal investigators: Mcarthur, Andrew G; Van Domselaar, Gary H
Keywords: Antimicrobial Resistance; Biocuration; Bioinformatics; Biological Databases; Comprehensive Antibiotic Resistance Database; Genome Annotation; Genomic Epidemiology; Predictive Analysis; Resistome; Surveillance
The Canadian Bioinformatics, Computational Biology and Health Data Sciences Training and Community Platform (BCBHDS Platform)
Principal investigators: Brazas, Michelle D; Bourque, Guillaume; Hsiao, William; Hughes, Nia; Hussin, Julie; Kong, Jude D; Pai, Shraddha; Sukhai, Mahadeo; Wasserman, Wyeth W; Wishart, David S
Keywords: Bioinformatics, Computational Biology & Health Data Science; Championing Diverse Talent And Careers; Competency Based Learning Pathways; Graduates, Post-Graduates And Early Career Researchers; Idea- And Career-Focused Matched Mentorship Guidance; Interdisciplinary, Intersectoral Capacity Building; Local Training Opportunities And Awards; National Community Building Activities; On-Demand, Virtual And In-Person Training; Professional Development Training
Technology, Policy and Implementation: a cross-disciplinary workshop to generate innovative solutions for data sharing in public health genomic epidemiology practice
Principal investigators: Hsiao, William; Krajden, Mel; Van Domselaar, Gary H
Keywords: Artificial Intelligence; Data Governance; Data Sharing; Genomic Epidemiology; Global Health; Implementation Science; Infectious Diseases; Ontology; Public Health; Social And Technological Equity
Bioinformatics Tools to Improve Data Sharing and Re-use in Public Health - applications in antimicrobial resistance profiling and source tracking.
Principal investigators: Hsiao, William; Patrick, David M; Van Domselaar, Gary H
Keywords: Antimicrobial Resistance; Data Integration; Data Sharing; Enteric Bacteria; Genomic Epidemiology; Ontology; Semantic Web; Tuberculosis
From public funding decisions: CIHR since 2008, NSERC since 1991 and SSHRC since 1998 with their latest competition results, the Canada Foundation for Innovation, Genome Canada, the Canadian Space Agency, Canada Research Chairs, the Fonds de recherche du Québec, Ontario research funding, Michael Smith Health Research BC, the Canadian Cancer Society, Heart & Stroke and Brain Canada.
Frequent collaborators
- Robert Beiko and Rob Beiko: 193 shared papers
- Natalie Knox and Gary Van Domselaar: 25 shared papers
- Robert Beiko and Fiona Brinkman: 14 shared papers
- Fiona Brinkman and Rob Beiko: 14 shared papers
- Andrew McArthur and Finlay Maguire: 13 shared papers
- Robert Beiko and Finlay Maguire: 13 shared papers
- Finlay Maguire and Rob Beiko: 13 shared papers
- Andrew McArthur and Fiona Brinkman: 10 shared papers
- Andrew McArthur and Robert Beiko: 9 shared papers
- Fiona Brinkman and Natalie Knox: 8 shared papers
- Finlay Maguire and Idowu Olawoye: 7 shared papers
- Andrew McArthur and Natalie Knox: 6 shared papers
- Fiona Brinkman and Emma Griffiths: 5 shared papers
- Eric Brown and Andrew McArthur: 3 shared papers
- Fiona Brinkman and Gary Van Domselaar: 3 shared papers
- Finlay Maguire and Emma Griffiths: 3 shared papers
- Emma Griffiths and Gary Van Domselaar: 3 shared papers
- Andrew McArthur and Emma Griffiths: 2 shared papers
- Robert Beiko and Emma Griffiths: 2 shared papers
- Emma Griffiths and Rob Beiko: 2 shared papers
- Eric Brown and Robert Beiko: 1 shared paper
- Eric Brown and Fiona Brinkman: 1 shared paper
- Eric Brown and Emma Griffiths: 1 shared paper
- Andrew McArthur and Idowu Olawoye: 1 shared paper
- Idowu Olawoye and Emma Griffiths: 1 shared paper
- Natalie Knox and Emma Griffiths: 1 shared paper
- Department of Biochemistry and Biomedical Sciences
- FHS
- Department of Molecular Biology and Biochemistry
- Department of Medical Microbiology and Infectious Diseases
- Computerscience
- Computer Science
- Department of Microbiology & Immunology
- Other
Co-authors at Simon Fraser University, colored by department. Thicker lines mean more shared papers; select anyone to open their profile and their own map.
Fiona Brinkman
Department of Molecular Biology and Biochemistry
5 shared papers, latest 2023
William Hsiao
Department of Pathology and Laboratory Medicine
4 shared papers, latest 2023
Gary Van Domselaar
Department of Medical Microbiology and Infectious Diseases
3 shared papers, latest 2023
Finlay Maguire
Faculty
3 shared papers, latest 2023
Rob Beiko
Computerscience
2 shared papers, latest 2023
Andrew McArthur
Department of Biochemistry and Biomedical Sciences
2 shared papers, latest 2023
Robert Beiko
Computer Science
2 shared papers, latest 2023
Natalie Knox
Faculty
1 shared papers, latest 2019
Idowu Olawoye
Department of Microbiology & Immunology
1 shared papers, latest 2023
Eric Brown
Department of Biochemistry and Biomedical Sciences
1 shared papers, latest 2023
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Profile data last refreshed on September 29, 2026 from the university directory, publication records and public research funding records.