This profile is built from public research funding records (CIHR, NSERC and SSHRC) and PubMed. We have not imported them from a Université de Sherbrooke directory, so their courses and email address may be missing. Find their university profile.
Research
Latest papers
An overview of computational methods for gene prediction in eukaryotes: strengths, limitations, and future directions.
Bioinformatics advances · 2025 · senior author
TranscriptDB: a transcript-centric database to study eukaryotic transcript conservation and evolution.
Nucleic acids research · 2025 · senior author
SimSpliceEvol2: alternative splicing-aware simulation of biological sequence evolution and transcript phylogenies.
BMC bioinformatics · 2024 · senior author
Latest funding
- $15,000
Support for the organization and delivery of the 2024 edition of the International Conference on Intelligent Systems for Molecular Biology (ISMB2024), presented by the International Society of Computational Biology (ISCB).
CIHR · 2024 · Nominated PI
- $5,550,000
The Canadian Bioinformatics, Computational Biology and Health Data Sciences Training and Community Platform (BCBHDS Platform)
CIHR · 2024 · Co-investigator
- $9,644
Support for the organization of the eight edition of the Quest for Orthologs (QfO8) : connecting communities in the quest for orthologs
CIHR · 2024 · Co-investigator
7 publications.
An overview of computational methods for gene prediction in eukaryotes: strengths, limitations, and future directions.
Djossou A, Ouedraogo WYDD, Ouangraoua A
TranscriptDB: a transcript-centric database to study eukaryotic transcript conservation and evolution.
Ouedraogo WYDD, Ouangraoua A
SimSpliceEvol2: alternative splicing-aware simulation of biological sequence evolution and transcript phylogenies.
Ouedraogo WYDD, Ouangraoua A
Orthology and Paralogy Relationships at Transcript Level.
Ouedraogo WYDD, Ouangraoua A
Where are G-quadruplexes located in the human transcriptome?
Vannutelli A, Belhamiti S, Garant JM, Ouangraoua A, Perreault JP
OpenProt: a more comprehensive guide to explore eukaryotic coding potential and proteomes.
Brunet MA, Brunelle M, Lucier JF, Delcourt V, Levesque M, Grenier F, Samandi S, Leblanc S, Aguilar JD, Dufour P, Jacques JF, Fournier I, Ouangraoua A, Scott MS, Boisvert FM, Roucou X
Deep transcriptome annotation enables the discovery and functional characterization of cryptic small proteins.
Samandi S, Roy AV, Delcourt V, Lucier JF, Gagnon J, Beaudoin MC, Vanderperre B, Breton MA, Motard J, Jacques JF, Brunelle M, Gagnon-Arsenault I, Fournier I, Ouangraoua A, Hunting DJ, Cohen AA, Landry CR, Scott MS, Roucou X
Support for the organization and delivery of the 2024 edition of the International Conference on Intelligent Systems for Molecular Biology (ISMB2024), presented by the International Society of Computational Biology (ISCB).
Principal investigators: Ouangraoua, Aida
Keywords: Artificial Intelligence; Bioinformatics; Biomedical Informatics; Computational Biology; Data Mining; Genomics; Machine Learning; Molecular Modeling; Structural Bioinformatics; Systems Biology
The Canadian Bioinformatics, Computational Biology and Health Data Sciences Training and Community Platform (BCBHDS Platform)
Principal investigators: Brazas, Michelle D; Bourque, Guillaume; Hsiao, William; Hughes, Nia; Hussin, Julie; Kong, Jude D; Pai, Shraddha; Sukhai, Mahadeo; Wasserman, Wyeth W; Wishart, David S
Keywords: Bioinformatics, Computational Biology & Health Data Science; Championing Diverse Talent And Careers; Competency Based Learning Pathways; Graduates, Post-Graduates And Early Career Researchers; Idea- And Career-Focused Matched Mentorship Guidance; Interdisciplinary, Intersectoral Capacity Building; Local Training Opportunities And Awards; National Community Building Activities; On-Demand, Virtual And In-Person Training; Professional Development Training
Support for the organization of the eight edition of the Quest for Orthologs (QfO8) : connecting communities in the quest for orthologs
Principal investigators: Diallo, Abdoulaye B
Keywords: Algorithms; Ancestral Genes; Bioinformatics; Evolution; Genes; Homologs; Orthologs; Rearrangement
Informatic infrastructure to foster omics discoveries and innovations
Principal investigators: Brunet, Marie
Keywords: Bioinformatics; Computational biology; Deep Learning; Genome evolution; Genomics; Proteomics; Transcriptomics
Gene evolution at the transcript level: models and algorithms
Principal investigators: Ouangraoua, Aida
Keywords: Algorithms; Bioinformatics; Comparative genomics; Computational genomics; Gene evolution; Graph theory; Molecular evolution; Phylogenetics; Transcript evolution
Biological And Computational Complexity
Principal investigators: Ouangraoua, Aida
Biological and Computational Complexity
Principal investigators: Ouangraoua, Aida
Structure-aware models and algorithms for reconstructing the evolution and ancestral states of genes and genomes
Principal investigators: Ouangraoua, Aida
complexité biologique et informatique
Principal investigators: Ouangraoua, Aida
Keywords: CRC
complexité biologique et informatique
Principal investigators: Ouangraoua, Aida
Keywords: CRC
From CIHR, NSERC and SSHRC funding decisions: CIHR since 2008, NSERC since 1991 and SSHRC since 1998, including their latest published competition results.
Frequent collaborators
- Biochemistry
- Other
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