This profile is built from public research funding records (CIHR, NSERC and SSHRC) and PubMed. We have not imported them from a University of Waterloo directory, so their courses may be missing. Find their university profile.
Research
Latest papers
Comparative proteomics of biofilm development in Pseudoalteromonas tunicata discovers a distinct family of Ca2+-dependent adhesins
mBio · 2025
Construction and Functional Characterization of a Heterologous Quorum Sensing Circuit in Clostridium sporogenes.
ACS synthetic biology · 2025 · senior author
TrackRefiner a tool for refinement of bacillus cell tracking data.
NPJ systems biology and applications · 2025 · senior author
Latest funding
- $74,000
Computational analysis of microbial population dynamics
NSERC · 2024 · Principal investigator
- $120,000
Model-based design for synthetic (micro)biology
NSERC · 2018 · Principal investigator
- $408,990
Model-based design for synthetic (micro)biology
NSERC · 2018 · Principal investigator
23 publications.
Comparative proteomics of biofilm development in Pseudoalteromonas tunicata discovers a distinct family of Ca2+-dependent adhesins
Ali S, Stavropoulos A, Jenkins B, Graves S, Ahmadi A, Marzbanrad V, Che G, Cheng J, Tan H, Wei X
Construction and Functional Characterization of a Heterologous Quorum Sensing Circuit in Clostridium sporogenes.
Sadr S, Zargar B, Aucoin MG, Ingalls B
TrackRefiner a tool for refinement of bacillus cell tracking data.
Ahmadi A, Dostmohammadi A, Mclean R, Ingalls B
From single cells to communities: Mathematical perspectives on bacterial quorum sensing.
Sadr S, Zargar B, Aucoin MG, Ingalls B
A benchmarked comparison of software packages for time-lapse image processing of monolayer bacterial population dynamics.
Ahmadi A, Courtney M, Ren C, Ingalls B
No two clones are alike: characterization of heterologous subpopulations in a transgenic cell line of the model diatom Phaeodactylum tricornutum.
Diaz-Garza AM, Merindol N, Dos Santos KCG, Lavoie-Marchand F, Ingalls B, Desgagné-Penix I
Heterologous expression of NoxA confers aerotolerance in Clostridium sporogenes.
Sadr S, Zargar B, Perez J, Aucoin MG, Ingalls B
Kinetic modelling of β-cell metabolism reveals control points in the insulin-regulating pyruvate cycling pathways.
Rahul R, Stinchcombe AR, Joseph JW, Ingalls B
NLoed: A Python Package for Nonlinear Optimal Experimental Design in Systems Biology.
Braniff N, Pearce T, Lu Z, Astwood M, Forrest WSR, Receno C, Ingalls B
Deep reinforcement learning for optimal experimental design in biology.
Treloar NJ, Braniff N, Ingalls B, Barnes CP
Computational analysis of microbial population dynamics
Principal investigators: Ingalls, Brian
Keywords: dynamic modelling; systems biology; synthetic biology; microbiology; population dynamics; deep learning; optimal experimental design; agent based modelling; differential equation modelling
Model-based design for synthetic (micro)biology
Principal investigators: Ingalls, Brian
Model-based design for synthetic (micro)biology
Principal investigators: Ingalls, Brian
Development of mathematical modelling tools for comparison of biosimilars
Principal investigators: Ingalls, Brian
Cell sorter for university facility
Principal investigators: Dixon, Brian
University of waterloo visit lallemand: collaborative opportunities in synthetic biology
Principal investigators: Ingalls, Brian
Control-Theoretic Approaches in Systems Biology: sensitivity conservations as performance constraints
Principal investigators: Ingalls, Brian
Control-theoretic approaches to systems biology
Principal investigators: Ingalls, Brian
Computation of controllers for complex systems
Principal investigators: Morris, Kirsten
Development of a model-based optimization strategy for mab production
Principal investigators: Budman, Hector
From CIHR, NSERC and SSHRC funding decisions: CIHR since 2008, NSERC since 1991 and SSHRC since 1998, including their latest published competition results.
Frequent collaborators
- Hector Budman and Brian Ingalls: 4 shared papers
- Hector Budman and Brendan McConkey: 4 shared papers
- Brian Ingalls and Brendan McConkey: 4 shared papers
- Silvana Ilie and Brian Ingalls: 2 shared papers
- Andrew Doxey and Brian Ingalls: 1 shared paper
- Mads Kaern and Radhakrishnan Mahadevan: 1 shared paper
- Mads Kaern and Brian Ingalls: 1 shared paper
- Radhakrishnan Mahadevan and Brian Ingalls: 1 shared paper
- Carolyn Ren and Brian Ingalls: 1 shared paper
- Applied Mathematics
- Biology
- Chemical Engineering
- Mathematics
- Medicine
- Mechanical and Mechatronics Engineering
- Cellular and Molecular Medicine
- Other
Co-authors at University of Waterloo, colored by department. Thicker lines mean more shared papers; select anyone to open their profile and their own map.
Brendan McConkey
Biology
4 shared papers, latest 2014
Hector Budman
Chemical Engineering
4 shared papers, latest 2014
Silvana Ilie
Mathematics
2 shared papers, latest 2018
Andrew Doxey
Medicine
1 shared papers, latest 2025
Mads Kaern
Cellular and Molecular Medicine
1 shared papers, latest 2021
Radhakrishnan Mahadevan
Department of Chemical Engineering and Applied Chemistry
1 shared papers, latest 2021
Carolyn Ren
Mechanical and Mechatronics Engineering
1 shared papers, latest 2024
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