Faculty profile

Etienne Caron

ResearcherUniversité de Montréal

This profile is built from public research funding records (CIHR, NSERC and SSHRC) and PubMed. We have not imported them from a Université de Montréal directory, so their courses may be missing. Find their university profile.

Etienne Caron

Researcher

Health Sciences

Université de Montréal

Montreal, Quebec, Canada

Supervision signals

Has led research grants, which requires an independent research appointment. Ask their department whether they supervise graduate students.
8 publications in the last five years, latest in 2024.
Senior (last) author on 5 recent papers, a sign of leading a research group.
Principal investigator on 3 research grants (2 NSERC, 1 CIHR), most recently in 2020.

These signals come from public records, including CIHR, NSERC and SSHRC funding decisions. Ask the professor or the graduate program whether they are taking new students.

Academic metrics

Publications

Citations

h-index

Collaborators

Grants

Publications by year

Counts cover the works listed on the university profile; citation counts come from Dimensions.

Profiles and links

Search on Google Scholar

Find them onX · LinkedIn · Bluesky · YouTube

Signals and details

Research

Epitope Hla Immunopeptidomics Sars-Cov-2 Vaccine

Latest papers

Machine learning-enhanced immunopeptidomics applied to T-cell epitope discovery for COVID-19 vaccines.
Nature communications · 2024 · senior author
Integrated Immunopeptidomics and Proteomics Study of SARS-CoV-2-Infected Calu-3 Cells Reveals Dynamic Changes in Allele-specific HLA Abundance and Antigen Presentation.
Molecular & cellular proteomics : MCP · 2023
Unlocking the potential of microfluidics in mass spectrometry-based immunopeptidomics for tumor antigen discovery.
Cell reports methods · 2023 · senior author

All 21 publications

Latest funding

Defining thymic B cell origin and function
CIHR · 2022 · Co-investigator
$929,475
Regulation of the inflammatory response by NOX2-derived reactive oxygen species
CIHR · 2021 · Co-investigator
$300,000
Coronavirus Variants Rapid Response Network: CoVaRR-Net - Extension
CIHR · 2021 · Co-investigator
$9,000,000

All 7 grants and awards

21 publications.

Machine learning-enhanced immunopeptidomics applied to T-cell epitope discovery for COVID-19 vaccines.

Kovalchik KA, Hamelin DJ, Kubiniok P, Bourdin B, Mostefai F, Poujol R, Paré B, Simpson SM, Sidney J, Bonneil É, Courcelles M, Saini SK, Shahbazy M, Kapoor S, Rajesh V, Weitzen M, Grenier JC, Gharsallaoui B, Maréchal L, Wu Z, Savoie C, Sette A, Thibault P, Sirois I, Smith MA, Decaluwe H, Hussin JG, Lavallée-Adam M, Caron E

Nature communications2024Senior author

DOI: 10.1038/s41467-024-54734-9 PMID: 39609459

Integrated Immunopeptidomics and Proteomics Study of SARS-CoV-2-Infected Calu-3 Cells Reveals Dynamic Changes in Allele-specific HLA Abundance and Antigen Presentation.

Chen R, Fulton KM, Tran A, Duque D, Kovalchik K, Caron E, Twine SM, Li J

Molecular & cellular proteomics : MCP2023

DOI: 10.1016/j.mcpro.2023.100645 PMID: 37709257

Unlocking the potential of microfluidics in mass spectrometry-based immunopeptidomics for tumor antigen discovery.

Stutzmann C, Peng J, Wu Z, Savoie C, Sirois I, Thibault P, Wheeler AR, Caron E

Cell reports methods2023Senior author

DOI: 10.1016/j.crmeth.2023.100511 PMID: 37426761

Population Genomics Approaches for Genetic Characterization of SARS-CoV-2 Lineages.

Mostefai F, Gamache I, N'Guessan A, Pelletier J, Huang J, Murall CL, Pesaranghader A, Gaonac'h-Lovejoy V, Hamelin DJ, Poujol R, Grenier JC, Smith M, Caron E, Craig M, Wolf G, Krishnaswamy S, Shapiro BJ, Hussin JG

Frontiers in medicine2022

DOI: 10.3389/fmed.2022.826746 PMID: 35265640

Understanding the constitutive presentation of MHC class I immunopeptidomes in primary tissues.

Kubiniok P, Marcu A, Bichmann L, Kuchenbecker L, Schuster H, Hamelin DJ, Duquette JD, Kovalchik KA, Wessling L, Kohlbacher O, Rammensee HG, Neidert MC, Sirois I, Caron E

iScience2022Senior author

DOI: 10.1016/j.isci.2022.103768 PMID: 35141507

The mutational landscape of SARS-CoV-2 variants diversifies T cell targets in an HLA-supertype-dependent manner.

Hamelin DJ, Fournelle D, Grenier JC, Schockaert J, Kovalchik KA, Kubiniok P, Mostefai F, Duquette JD, Saab F, Sirois I, Smith MA, Pattijn S, Soudeyns H, Decaluwe H, Hussin J, Caron E

Cell systems2022Senior author

DOI: 10.1016/j.cels.2021.09.013 PMID: 34637888

Generation of HLA Allele-Specific Spectral Libraries to Identify and Quantify Immunopeptidomes by SWATH/DIA-MS.

Kovalchik K, Hamelin D, Caron E

Methods in molecular biology (Clifton, N.J.)2022Senior author

DOI: 10.1007/978-1-0716-1936-0_11 PMID: 34905171

MhcVizPipe: A Quality Control Software for Rapid Assessment of Small- to Large-Scale Immunopeptidome Datasets.

Kovalchik KA, Ma Q, Wessling L, Saab F, Duquette JD, Kubiniok P, Hamelin DJ, Faridi P, Li C, Purcell AW, Jang A, Paramithiotis E, Tognetti M, Reiter L, Bruderer R, Lanoix J, Bonneil É, Courcelles M, Thibault P, Caron E, Sirois I

Molecular & cellular proteomics : MCP2022

DOI: 10.1016/j.mcpro.2021.100178 PMID: 34798331

RHybridFinder: An R package to process immunopeptidomic data for putative hybrid peptide discovery.

Saab F, Hamelin DJ, Ma Q, Kovalchik KA, Sirois I, Faridi P, Li C, Purcell AW, Kubiniok P, Caron E

STAR protocols2021Senior author

DOI: 10.1016/j.xpro.2021.100875 PMID: 34746858

The SysteMHC Atlas: a Computational Pipeline, a Website, and a Data Repository for Immunopeptidomic Analyses.

Shao W, Caron E, Pedrioli P, Aebersold R

Methods in molecular biology (Clifton, N.J.)2020

DOI: 10.1007/978-1-0716-0327-7_12 PMID: 32124319

Defining thymic B cell origin and function

Co-investigatorCIHR2022Project Grant

Principal investigators: Lesage, Sylvie

Keywords: Autoimmunity; B Cells; Cellular Immunology; Central Tolerance; Immune Tolerance; Mouse Models; T Cells; Thymus

$929,475

Regulation of the inflammatory response by NOX2-derived reactive oxygen species

Co-investigatorCIHR2021Project Grant - PA: Infection and Immunity (Early Career Research Support)

Principal investigators: Touzot, Fabien

Keywords: Autophagy; Chronic Granulomatous Disease; Gasdermin; Mitochondria; Nlrp3 Inflammasome; Nox2; Reactive Oxygen Species

$300,000

Coronavirus Variants Rapid Response Network: CoVaRR-Net - Extension

Co-investigatorCIHR2021Op. Gr.: Coronavirus Variants Rapid Response Network (CoVaRR-Net) Extension

Principal investigators: Langlois, Marc-Andre; Abraham, Ninan; Behr, Marcel A; Brouwers, Melissa C; Crawley, Angela M; Flamand, Louis; Gingras, Anne-Claude; Gommerman, Jennifer L; Grimshaw, Jeremy M; Hsu, Amy T; Huyser, Kimberly R; Manuel, Douglas G; Muhajarine, Nazeem; Ragoussis, Ioannis; Rasmussen, Angela; Shapiro, Jesse

Keywords: Covarr-Net; Covid-19; Rapid-Response; Sars-Cov-2; Variants Of Concern

$9,000,000

Understanding the genesis of the spliced immunopeptidome

Principal investigatorNSERC2020Discovery Launch Supplement

Principal investigators: Caron, Etienne

$12,500

Deciphering the immunopeptidomic landscape of COVID-19 disease

Nominated PICIHR2020Operating Grant: COVID-19 - Project Grant

Principal investigators: Caron, Etienne; Twine, Susan; Veres, Teodor

Keywords: Epitope; Hla; Immunopeptidomics; Sars-Cov-2; Vaccine

$100,000

Understanding the genesis of the spliced immunopeptidome

Principal investigatorNSERC2020Discovery Grants Program - Individual

Principal investigators: Caron, Etienne

$164,000

Systems Biology in Cancer & Immunology Symposium

Co-investigatorCIHR2009Meetings, Planning & Dissemination Grant: Cancer Research

Principal investigators: Sauvageau, Martin

Keywords: Cancer Research; Immunogical Aspects Of Cancer; Symposium; Systems Biology

$14,465

From CIHR, NSERC and SSHRC funding decisions: CIHR since 2008, NSERC since 1991 and SSHRC since 1998, including their latest published competition results.

Something wrong or missing on this profile? Suggest a correction

Etienne Caron

Research

Latest papers

Latest funding

Machine learning-enhanced immunopeptidomics applied to T-cell epitope discovery for COVID-19 vaccines.

Integrated Immunopeptidomics and Proteomics Study of SARS-CoV-2-Infected Calu-3 Cells Reveals Dynamic Changes in Allele-specific HLA Abundance and Antigen Presentation.

Unlocking the potential of microfluidics in mass spectrometry-based immunopeptidomics for tumor antigen discovery.

Population Genomics Approaches for Genetic Characterization of SARS-CoV-2 Lineages.

Understanding the constitutive presentation of MHC class I immunopeptidomes in primary tissues.

The mutational landscape of SARS-CoV-2 variants diversifies T cell targets in an HLA-supertype-dependent manner.

Generation of HLA Allele-Specific Spectral Libraries to Identify and Quantify Immunopeptidomes by SWATH/DIA-MS.

MhcVizPipe: A Quality Control Software for Rapid Assessment of Small- to Large-Scale Immunopeptidome Datasets.

RHybridFinder: An R package to process immunopeptidomic data for putative hybrid peptide discovery.

The SysteMHC Atlas: a Computational Pipeline, a Website, and a Data Repository for Immunopeptidomic Analyses.

Defining thymic B cell origin and function

Regulation of the inflammatory response by NOX2-derived reactive oxygen species

Coronavirus Variants Rapid Response Network: CoVaRR-Net - Extension

Understanding the genesis of the spliced immunopeptidome

Deciphering the immunopeptidomic landscape of COVID-19 disease

Understanding the genesis of the spliced immunopeptidome

Systems Biology in Cancer & Immunology Symposium

Frequent collaborators

Claude Perreault

Pierre Thibault

Pierre Rainville

Mathieu Roy

Mathieu Roy

Etienne Vachon-Presseau

Marie-France Marin

Morgan Craig

Morgan Craig

Julie Hussin

Marc Therrien

Sylvie Mader

Sylvie Mader

Sylvain Meloche

Marie-France Marin

Etienne Caron

Research

Latest papers

Latest funding

Machine learning-enhanced immunopeptidomics applied to T-cell epitope discovery for COVID-19 vaccines.

Integrated Immunopeptidomics and Proteomics Study of SARS-CoV-2-Infected Calu-3 Cells Reveals Dynamic Changes in Allele-specific HLA Abundance and Antigen Presentation.

Unlocking the potential of microfluidics in mass spectrometry-based immunopeptidomics for tumor antigen discovery.

Population Genomics Approaches for Genetic Characterization of SARS-CoV-2 Lineages.

Understanding the constitutive presentation of MHC class I immunopeptidomes in primary tissues.

The mutational landscape of SARS-CoV-2 variants diversifies T&#xa0;cell targets in an HLA-supertype-dependent manner.

Generation of HLA Allele-Specific Spectral Libraries to Identify and Quantify Immunopeptidomes by SWATH/DIA-MS.

MhcVizPipe: A Quality Control Software for Rapid Assessment of Small- to Large-Scale Immunopeptidome Datasets.

RHybridFinder: An R package to process immunopeptidomic data for putative hybrid peptide discovery.

The SysteMHC Atlas: a Computational Pipeline, a Website, and a Data Repository for Immunopeptidomic Analyses.

Defining thymic B cell origin and function

Regulation of the inflammatory response by NOX2-derived reactive oxygen species

Coronavirus Variants Rapid Response Network: CoVaRR-Net - Extension

Understanding the genesis of the spliced immunopeptidome

Deciphering the immunopeptidomic landscape of COVID-19 disease

Understanding the genesis of the spliced immunopeptidome

Systems Biology in Cancer & Immunology Symposium

Frequent collaborators

Claude Perreault

Pierre Thibault

Pierre Rainville

Mathieu Roy

Mathieu Roy

Etienne Vachon-Presseau

Marie-France Marin

Morgan Craig

Morgan Craig

Julie Hussin

Marc Therrien

Sylvie Mader

Sylvie Mader

Sylvain Meloche

Marie-France Marin

The mutational landscape of SARS-CoV-2 variants diversifies T cell targets in an HLA-supertype-dependent manner.