Faculty profile
Brendan Frey
Back to facultyThis profile is built from public research funding records (CIHR, NSERC and SSHRC) and PubMed. We have not imported them from a University of Toronto directory, so their courses and email address may be missing. Find their university profile.
Latest papers
A graph neural network approach for molecule carcinogenicity prediction.
Bioinformatics (Oxford, England) · 2022
Whole-genome sequencing expands diagnostic utility and improves clinical management in paediatric medicine
npj Genomic Medicine · 2016
Does conservation account for splicing patterns?
BMC genomics · 2016 · senior author
Latest funding
- $200,000
Biological Computation
NSERC · 2018 · Principal investigator
- $410,000
Regulatory models for RNA processing
NSERC · 2018 · Principal investigator
- $100,000
Biological Computation
NSERC · 2018 · Principal investigator
8 publications.
A graph neural network approach for molecule carcinogenicity prediction.
Fradkin P, Young A, Atanackovic L, Frey B, Lee LJ, Wang B
Whole-genome sequencing expands diagnostic utility and improves clinical management in paediatric medicine
Stavropoulos DJ, Merico D, Jobling R, Bowdin S, Monfared N, Thiruvahindrapuram B, Nalpathamkalam T, Pellecchia G, Yuen RKC, Szego MJ
Does conservation account for splicing patterns?
Wainberg M, Alipanahi B, Frey B
Widespread intron retention in mammals functionally tunes transcriptomes.
Braunschweig U, Barbosa-Morais NL, Pan Q, Nachman EN, Alipanahi B, Gonatopoulos-Pournatzis T, Frey B, Irimia M, Blencowe BJ
Integrating high-throughput genetic interaction mapping and high-content screening to explore yeast spindle morphogenesis.
Vizeacoumar FJ, van Dyk N, S Vizeacoumar F, Cheung V, Li J, Sydorskyy Y, Case N, Li Z, Datti A, Nislow C, Raught B, Zhang Z, Frey B, Bloom K, Boone C, Andrews BJ
Comparative proteomics profiling of a phospholamban mutant mouse model of dilated cardiomyopathy reveals progressive intracellular stress responses.
Gramolini AO, Kislinger T, Alikhani-Koopaei R, Fong V, Thompson NJ, Isserlin R, Sharma P, Oudit GY, Trivieri MG, Fagan A, Kannan A, Higgins DG, Huedig H, Hess G, Arab S, Seidman JG, Seidman CE, Frey B, Perry M, Backx PH, Liu PP, MacLennan DH, Emili A
Integrated proteomic and transcriptomic profiling of mouse lung development and Nmyc target genes.
Cox B, Kislinger T, Wigle DA, Kannan A, Brown K, Okubo T, Hogan B, Jurisica I, Frey B, Rossant J, Emili A
Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling.
Kislinger T, Cox B, Kannan A, Chung C, Hu P, Ignatchenko A, Scott MS, Gramolini AO, Morris Q, Hallett MT, Rossant J, Hughes TR, Frey B, Emili A
Biological Computation
Principal investigators: Frey, Brendan
Regulatory models for RNA processing
Principal investigators: Frey, Brendan
Biological Computation
Principal investigators: Frey, Brendan
Biological Computation
Principal investigators: Frey, Brendan
Keywords: information technology; molecular biology; artificial ; intelligence; genetics; machine learning; deep learning; ; genome biology; genome medicine; gene regulation
Systems Genetics & Cell Biology: Mapping Biological Pathways in the Eukaryotic Cell
Principal investigators: Andrews, Brenda J
Keywords: Automated Imaging; Cell Cycle Regulation; Functional Genomics; Gene Expression; Genetic Interactions; Genetic Networks; Molecular Biology; Phenomics; Systems Biology; Yeast Genomics
Genomes to Outcomes in Autism Spectrum Disorders
Principal investigators: Scherer, Stephen W
Keywords: Autism Spectrum Disorders; Diagnostics; Individualized Treatment; Variants; Whole Genome Sequencing
A Unified Computational Model of Gene Regulation
Principal investigators: Frey, Brendan
A Unified Computational Model of Gene Regulation
Principal investigators: Frey, Brendan
The human regulatory code: methods and tools to transform biomedical research - Development
Principal investigators: Frey, Brendan
Biological Computation
Principal investigators: Frey, Brendan
Keywords: CRC
From CIHR, NSERC and SSHRC funding decisions: CIHR since 2008, NSERC since 1991 and SSHRC since 1998, including their latest published competition results.
Frequent collaborators
- Rosanna Weksberg and David Chitayat: 21 shared papers
- Thomas Kislinger and Andrew Emili: 13 shared papers
- Rosanna Weksberg and Michael Brudno: 11 shared papers
- Thomas Kislinger and Igor Jurisica: 9 shared papers
- Andrew Emili and Zhaolei Zhang: 8 shared papers
- Brian Cox and Janet Rossant: 7 shared papers
- Charles Boone and Zhaolei Zhang: 6 shared papers
- Thomas Kislinger and Brian Cox: 5 shared papers
- Thomas Kislinger and Janet Rossant: 5 shared papers
- Michael Brudno and David Chitayat: 5 shared papers
- David Chitayat and Lauren Chad: 5 shared papers
- Brian Cox and Andrew Emili: 5 shared papers
- Andrew Emili and Pingzhao Hu: 5 shared papers
- Resham Ejaz and David Chitayat: 4 shared papers
- Charles Boone and Brian Raught: 4 shared papers
- Charles Boone and Andrew Emili: 4 shared papers
- Rosanna Weksberg and Lauren Chad: 4 shared papers
- Michael Brudno and Sarah Bowdin: 4 shared papers
- Igor Jurisica and Brian Raught: 4 shared papers
- Lauren Chad and Eriskay Liston: 4 shared papers
- Thomas Kislinger and Brendan Frey: 3 shared papers
- Rosanna Weksberg and Sarah Bowdin: 3 shared papers
- Rosanna Weksberg and Peter Kannu: 3 shared papers
- Sarah Bowdin and Eriskay Liston: 3 shared papers
- David Chitayat and Peter Kannu: 3 shared papers
- Igor Jurisica and Andrew Emili: 3 shared papers
- Igor Jurisica and Janet Rossant: 3 shared papers
- Andrew Emili and Brendan Frey: 3 shared papers
- Peter Kannu and Lauren Chad: 3 shared papers
- BO WANG and Zhaolei Zhang: 3 shared papers
- Resham Ejaz and Rosanna Weksberg: 2 shared papers
- Resham Ejaz and Michael Brudno: 2 shared papers
- Thomas Kislinger and Quaid Morris: 2 shared papers
- Charles Boone and Quaid Morris: 2 shared papers
- Quaid Morris and Andrew Emili: 2 shared papers
- Michael Brudno and BO WANG: 2 shared papers
- Michael Brudno and Eriskay Liston: 2 shared papers
- Sarah Bowdin and Raymond Kim: 2 shared papers
- Sarah Bowdin and Ayeshah Chaudhry: 2 shared papers
- David Chitayat and Ayeshah Chaudhry: 2 shared papers
- Brian Cox and Brendan Frey: 2 shared papers
- Janet Rossant and Brendan Frey: 2 shared papers
- Raymond Kim and Lauren Chad: 2 shared papers
- Raymond Kim and Eriskay Liston: 2 shared papers
- Resham Ejaz and Ayeshah Chaudhry: 1 shared paper
- Resham Ejaz and Brendan Frey: 1 shared paper
- Thomas Kislinger and Brian Raught: 1 shared paper
- Thomas Kislinger and Pingzhao Hu: 1 shared paper
- Charles Boone and BO WANG: 1 shared paper
- Charles Boone and Brendan Frey: 1 shared paper
- Rosanna Weksberg and Brendan Frey: 1 shared paper
- Quaid Morris and Pingzhao Hu: 1 shared paper
- Quaid Morris and Brendan Frey: 1 shared paper
- Michael Brudno and Brendan Frey: 1 shared paper
- Sarah Bowdin and Brendan Frey: 1 shared paper
- David Chitayat and Brendan Frey: 1 shared paper
- Igor Jurisica and Brendan Frey: 1 shared paper
- Brian Raught and Brendan Frey: 1 shared paper
- Peter Kannu and Brendan Frey: 1 shared paper
- Raymond Kim and Brendan Frey: 1 shared paper
- Lauren Chad and Brendan Frey: 1 shared paper
- BO WANG and Brendan Frey: 1 shared paper
- Michael Wainberg and Brendan Frey: 1 shared paper
- Eriskay Liston and Brendan Frey: 1 shared paper
- Ayeshah Chaudhry and Brendan Frey: 1 shared paper
- Zhaolei Zhang and Brendan Frey: 1 shared paper
- Pingzhao Hu and Brendan Frey: 1 shared paper
- Computer Science
- Donnelly Centre
- Biostatistics Division
- Electrical and Computer Engineering
- Banting and Best Department of Medical Research
- Department of Medical Biophysics
- Department of Physiology
- Other
Co-authors at University of Toronto, colored by department. Thicker lines mean more shared papers; select anyone to open their profile and their own map.
Andrew Emili
Banting and Best Department of Medical Research
3 shared papers, latest 2008
Thomas Kislinger
Department of Medical Biophysics
3 shared papers, latest 2008
Brian Cox
Department of Physiology
2 shared papers, latest 2007
Janet Rossant
Faculty
2 shared papers, latest 2007
Michael Brudno
Computer Science
1 shared papers, latest 2016
Sarah Bowdin
Computer Science
1 shared papers, latest 2016
David Chitayat
Computer Science
1 shared papers, latest 2016
Igor Jurisica
Rheumatology
1 shared papers, latest 2007
Brian Raught
Research Institute
1 shared papers, latest 2010
Peter Kannu
Developmental and Stem Cell Biology
1 shared papers, latest 2016
Raymond Kim
Department of Medicine
1 shared papers, latest 2016
Lauren Chad
Li Ka Shing Knowledge
1 shared papers, latest 2016
BO WANG
Faculty
1 shared papers, latest 2022
Michael Wainberg
Biostatistics Division
1 shared papers, latest 2016
Eriskay Liston
Faculty
1 shared papers, latest 2016
Ayeshah Chaudhry
Department of Laboratory Medicine and Pathobiology
1 shared papers, latest 2016
Zhaolei Zhang
Terrence Donnelly Centre for Cellular and Biomolecular Research
1 shared papers, latest 2010
Resham Ejaz
Pediatrics
1 shared papers, latest 2016
Pingzhao Hu
Biostatistics Division
1 shared papers, latest 2006
Charles Boone
Donnelly Centre
1 shared papers, latest 2010
A short, specific email works best. This draft uses one of their recent papers; replace the parts in brackets with your own details before sending.