Faculty profile
Jared Simpson
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Read how they describe their research on their University of Toronto profile.
Latest papers
Streptococcusdysgalactiae subsp. equisimilis from Diseased Pigs Are Genetically Distinct from Human Strains and Associated with Multidrug Resistance.
Microorganisms · 2025
Characterizing Risk Factors for Hospitalization and Clinical Characteristics in a Cohort of COVID-19 Patients Enrolled in the GENCOV Study
Viruses · 2023
Implementation of serological and molecular tools to inform COVID-19 patient management: protocol for the GENCOV prospective cohort study.
BMJ open · 2021
Latest funding
- $2,999,685
The Canadian Partnership for Tomorrow's Health (CanPath) Platform
CIHR · 2025 · Co-investigator
- $50,000
Bioinformatics School: Building a Skilled Workforce in Infectious Disease Epidemiology
CIHR · 2022 · Nominated PI
- $50,000
COVID-19 Variant Supplement - Implementation of serological and molecular tools to inform COVID-19 patient management
CIHR · 2021 · Co-investigator
4 publications.
Streptococcusdysgalactiae subsp. equisimilis from Diseased Pigs Are Genetically Distinct from Human Strains and Associated with Multidrug Resistance.
Hsu F, Gauvin K, Li K, Fairbrother JH, Simpson J, Gottschalk M, Fittipaldi N
Characterizing Risk Factors for Hospitalization and Clinical Characteristics in a Cohort of COVID-19 Patients Enrolled in the GENCOV Study
Morgan G, Casalino S, Chowdhary S, Frangione E, Fung CYJ, Haller S, Lapadula E, Scott M, Wolday D, Young J
Implementation of serological and molecular tools to inform COVID-19 patient management: protocol for the GENCOV prospective cohort study.
Taher J, Mighton C, Chowdhary S, Casalino S, Frangione E, Arnoldo S, Bearss E, Binnie A, Bombard Y, Borgundvaag B, Chertkow H, Clausen M, Devine L, Faghfoury H, Friedman SM, Gingras AC, Khan Z, Mazzulli T, McGeer A, McLeod SL, Pugh TJ, Richardson D, Simpson J, Stern S, Strug L, Taher A, Lerner-Ellis J
The khmer software package: enabling efficient nucleotide sequence analysis.
Crusoe MR, Alameldin HF, Awad S, Boucher E, Caldwell A, Cartwright R, Charbonneau A, Constantinides B, Edvenson G, Fay S, Fenton J, Fenzl T, Fish J, Garcia-Gutierrez L, Garland P, Gluck J, González I, Guermond S, Guo J, Gupta A, Herr JR, Howe A, Hyer A, Härpfer A, Irber L, Kidd R, Lin D, Lippi J, Mansour T, McA'Nulty P, McDonald E, Mizzi J, Murray KD, Nahum JR, Nanlohy K, Nederbragt AJ, Ortiz-Zuazaga H, Ory J, Pell J, Pepe-Ranney C, Russ ZN, Schwarz E, Scott C, Seaman J, Sievert S, Simpson J, Skennerton CT, Spencer J, Srinivasan R, Standage D, Stapleton JA, Steinman SR, Stein J, Taylor B, Trimble W, Wiencko HL, Wright M, Wyss B, Zhang Q, Zyme E, Brown CT
The Canadian Partnership for Tomorrow's Health (CanPath) Platform
Principal investigators: Brooks, Jennifer D; Awadalla, Philip
Keywords: Administrative Health Data; Biospecimens; Cohort; Data Linkage; Environmental Data; Health Emergencies; Longitudinal; Pandemics; Research Platform; Surveillance
Bioinformatics School: Building a Skilled Workforce in Infectious Disease Epidemiology
Principal investigators: Simpson, Jared T
Keywords: Bioinformatics Skill Development; Bioinformatics Tools & International Databases; Evolution Of Pathogens; Hands-On Learning; Infectious Diseases; Pathogen Genomics
COVID-19 Variant Supplement - Implementation of serological and molecular tools to inform COVID-19 patient management
Principal investigators: Lerner-Ellis, Jordan P; Taher, Jennifer
Keywords: Antibody; Covid-19; Genomes; Genomics; Immunity; Infection; Sars-Cov-2; Serology; Susceptibility; Virus
COVID-19 Variant Network - Implementation of serological and molecular tools to inform COVID-19 patient management
Principal investigators: Lerner-Ellis, Jordan P; Taher, Jennifer
Keywords: Antibody; Covid-19; Genomes; Genomics; Immunity; Infection; Sars-Cov-2; Serology; Susceptibility; Virus
SUrveilling Prospective Population cOhorts for COVID19 pRevalence and ouTcomes in Canada (SUPPORT-Canada)
Principal investigators: Awadalla, Philip; Abelson, Sagi; Bhatti, Parveen; broet, philippe; Cheung, Angela M; Dick, John E; Dummer, Trevor J; Lettre, Guillaume; Mclaughlin, John R; Simpson, Jared T; Sweeney, Ellen; Turner, Donna C; Vena, Jennifer E
Keywords: Covid-19; Inflammatory Markers; Population Cohorts; Population Prevalence; Seroprevalence; Social Determinants Of Health
Implementation of serological and molecular tools to inform COVID-19 patient management
Principal investigators: Lerner-Ellis, Jordan P; Taher, Jennifer
Keywords: Antibody; Covid-19; Genomes; Genomics; Immunity; Infection; Sars-Cov-2; Serology; Susceptibility; Virus
Back to the future: fast and accurate identification of shared genomic segments for disease gene mapping using population-based linkage analysis to take advantage of founder effects
Principal investigators: Paterson, Andrew D; Sun, Lei
Keywords: Crpytic Relatedness; Founder Effects; Genetic; Haplotype
The Cancer Genome Collaboratory
Principal investigators: Stein, Lincoln
Keywords: Cancer genomics; Cloud computing; Data sharing; Global Alliance for Genomics and Health; Protection of patient privacy; Bioinformatics; Genomics Software development for high performance cloud compute
From public funding decisions: CIHR since 2008, NSERC since 1991 and SSHRC since 1998 with their latest competition results, the Canada Foundation for Innovation, Genome Canada, the Canadian Space Agency, Canada Research Chairs, the Fonds de recherche du Québec, Ontario research funding, Michael Smith Health Research BC, the Canadian Cancer Society, Heart & Stroke and Brain Canada.
Frequent collaborators
- Jordan Lerner-Ellis and Yvonne Bombard: 71 shared papers
- Allison McGeer and Tony Mazzulli: 66 shared papers
- Anne-Claude Gingras and Allison McGeer: 60 shared papers
- Jordan Lerner-Ellis and Trevor Pugh: 33 shared papers
- Jordan Lerner-Ellis and Abdul Noor: 25 shared papers
- Yvonne Bombard and Trevor Pugh: 25 shared papers
- Anne-Claude Gingras and Tony Mazzulli: 23 shared papers
- Jordan Lerner-Ellis and Alexandra Binnie: 22 shared papers
- Yvonne Bombard and Abdul Noor: 22 shared papers
- Jordan Lerner-Ellis and Lisa Strug: 21 shared papers
- Jordan Lerner-Ellis and Jennifer Taher: 19 shared papers
- Yvonne Bombard and Lisa Strug: 18 shared papers
- Yvonne Bombard and Alexandra Binnie: 17 shared papers
- Jennifer Taher and Saranya Arnoldo: 17 shared papers
- Anne-Claude Gingras and Jordan Lerner-Ellis: 16 shared papers
- Anne-Claude Gingras and Trevor Pugh: 16 shared papers
- Anne-Claude Gingras and Alexandra Binnie: 16 shared papers
- Jordan Lerner-Ellis and Tony Mazzulli: 16 shared papers
- Allison McGeer and Alexandra Binnie: 16 shared papers
- Lisa Strug and Trevor Pugh: 16 shared papers
- Alexandra Binnie and Jennifer Taher: 16 shared papers
- Jennifer Taher and Ahmed Taher: 13 shared papers
- Jennifer Taher and Luke Devine: 13 shared papers
- Ahmed Taher and Luke Devine: 13 shared papers
- Alexandra Binnie and Abdul Noor: 11 shared papers
- Jordan Lerner-Ellis and Saranya Arnoldo: 10 shared papers
- Jordan Lerner-Ellis and Ahmed Taher: 10 shared papers
- Jordan Lerner-Ellis and Luke Devine: 10 shared papers
- Alexandra Binnie and Saranya Arnoldo: 10 shared papers
- Laurent Briollais and Jordan Lerner-Ellis: 9 shared papers
- Dawit Wolday and Jordan Lerner-Ellis: 8 shared papers
- Dawit Wolday and Alexandra Binnie: 7 shared papers
- Dawit Wolday and Anne-Claude Gingras: 6 shared papers
- Laurent Briollais and Alexandra Binnie: 6 shared papers
- Anne-Claude Gingras and Laurent Briollais: 4 shared papers
- Anne-Claude Gingras and Jared Simpson: 2 shared papers
- Jordan Lerner-Ellis and Jared Simpson: 2 shared papers
- Yvonne Bombard and Jared Simpson: 2 shared papers
- Lisa Strug and Jared Simpson: 2 shared papers
- Trevor Pugh and Jared Simpson: 2 shared papers
- Tony Mazzulli and Jared Simpson: 2 shared papers
- Alexandra Binnie and Jared Simpson: 2 shared papers
- Jennifer Taher and Jared Simpson: 2 shared papers
- Saranya Arnoldo and Jared Simpson: 2 shared papers
- Ahmed Taher and Jared Simpson: 2 shared papers
- Luke Devine and Jared Simpson: 2 shared papers
- Dawit Wolday and Jared Simpson: 1 shared paper
- Laurent Briollais and Jared Simpson: 1 shared paper
- Allison McGeer and Jared Simpson: 1 shared paper
- Abdul Noor and Jared Simpson: 1 shared paper
- Department of Laboratory Medicine & Pathobiology
- Department of Molecular Genetics
- Department of Medicine
- Critical Care Medicine
- Department of Statistical Sciences
- Department of Medical Biophysics
- Institute of Health Policy, Management, and Evaluation
- Other
Co-authors at University of Toronto, colored by department. Thicker lines mean more shared papers; select anyone to open their profile and their own map.
Luke Devine
Department of Medicine
2 shared papers, latest 2023
Anne-Claude Gingras
Department of Molecular Genetics
2 shared papers, latest 2023
Tony Mazzulli
Department of Laboratory Medicine & Pathobiology
2 shared papers, latest 2023
Alexandra Binnie
Critical Care Medicine
2 shared papers, latest 2023
Jennifer Taher
Department of Laboratory Medicine & Pathobiology
2 shared papers, latest 2023
Saranya Arnoldo
Department of Laboratory Medicine & Pathobiology
2 shared papers, latest 2023
Ahmed Taher
Department of Medicine
2 shared papers, latest 2023
Jordan Lerner-Ellis
Department of Laboratory Medicine & Pathobiology
2 shared papers, latest 2023
Yvonne Bombard
Institute of Health Policy, Management, and Evaluation
2 shared papers, latest 2023
Lisa Strug
Department of Statistical Sciences
2 shared papers, latest 2023
Trevor Pugh
Department of Medical Biophysics
2 shared papers, latest 2023
Laurent Briollais
Biostatistics Division
1 shared papers, latest 2023
Dawit Wolday
Department of Biochemistry and Biomedical Sciences
1 shared papers, latest 2023
Howard Chertkow
Department of Neurology and Neurosurgery
1 shared papers, latest 2021
Allison McGeer
Department of Laboratory Medicine & Pathobiology
1 shared papers, latest 2021
Abdul Noor
Department of Laboratory Medicine & Pathobiology
1 shared papers, latest 2023
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Profile data last refreshed on September 29, 2026 from the university directory, publication records and public research funding records.