This profile is built from public research funding records (CIHR, NSERC and SSHRC) and PubMed. We have not imported them from a University of British Columbia directory, so their courses and email address may be missing. Find their university profile.
Research
Latest papers
Benchmarking of Oxford Nanopore whole genome sequencing for germline variant and CpG methylation detection across Canada's national platform for genome sequencing and analysis.
Frontiers in genetics · 2026
Cross-Platform Methylation-Based Site of Origin Classification for Squamous Cell Carcinomas.
Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc · 2025
Proteomics and personalized PDX models identify treatment for a progressive malignancy within an actionable timeframe.
EMBO molecular medicine · 2025
Latest funding
- $27,000
Genetic determinants of polymorphic DNA methylation at imprinted regulatory regions in humans
CIHR · 2026 · Supervisor
- $2,000,000
Enhanced Population Cancer Care through Mainstream Genome Sequencing and Parent-of-Origin Detection
CIHR · 2024 · Co-investigator
- $852,974
Parent-of-Origin-Aware Genomic Analysis in Hereditary Cancer
CIHR · 2022 · Principal investigator
40 publications.
Benchmarking of Oxford Nanopore whole genome sequencing for germline variant and CpG methylation detection across Canada's national platform for genome sequencing and analysis.
Galvez JH, Mastromatteo S, O'Neill K, Eveleigh R, Djambazian H, Thiruvahindrapuram B, Chuah E, Chen SH, Hajianpour A, Wang Z, Paton TA, Desai S, Pullenayegum S, He L, Pandoh P, Zhao Y, Mungall K, Mungall AJ, Wintle RF, Bourque G, Scherer SW, Jones S, Lathrop M, McLaren M, Ragoussis J
Cross-Platform Methylation-Based Site of Origin Classification for Squamous Cell Carcinomas.
Zhang AW, Akbari V, Galbraith A, Kore Z, Li Y, Leung S, Ji JX, Dever K, MacIsaac J, Brewis H, Pan D, Kürten C, Ajisebutu A, Contreras-Sanz A, Moeen A, Zuccato JA, Patil V, Black PC, Lam W, Pleasance E, O'Neill K, Jones S, Marra M, Laskin J, Zadeh G, Mansouri S, Kobor M, Prisman E, McGuire A, Huntsman DG, Yip S, Naso JR
Proteomics and personalized PDX models identify treatment for a progressive malignancy within an actionable timeframe.
Barnabas GD, Bhat TA, Goebeler V, Leclair P, Azzam N, Melong N, Anderson C, Gom A, An S, Ergin EK, Shen Y, Conrrero A, Mungall AJ, Mungall KL, Maxwell CA, Reid GSD, Hirst M, Jones S, Chan JA, Senger DL, Berman JN, Parker SJ, Bush JW, Strahlendorf C, Deyell RJ, Lim CJ, Lange PF
"I Just Assumed This Was Already Being Done": Canadian Patient Preferences for Enhanced Data Sharing for Precision Oncology.
Pollard S, Ehman M, Hermansen A, Weymann D, Krebs E, Ho C, Lim HJ, Jones S, Bombard Y, Hanna TP, Hessels C, Longstaff H, Cook-Deegan R, Bubela T, Regier DA
The genome sequence of the Loggerhead sea turtle, Caretta caretta Linnaeus 1758.
Chang G, Jones S, Leelakumari S, Ashkani J, Culibrk L, O'Neill K, Tse K, Cheng D, Chuah E, McDonald H, Kirk H, Pandoh P, Pari S, Angelini V, Kyle C, Bertorelle G, Zhao Y, Mungall A, Moore R, Vilaça S, Jones S
Copy-scAT: Deconvoluting single-cell chromatin accessibility of genetic subclones in cancer.
Nikolic A, Singhal D, Ellestad K, Johnston M, Shen Y, Gillmor A, Morrissy S, Cairncross JG, Jones S, Lupien M, Chan JA, Neri P, Bahlis N, Gallo M
Contribution of Multiple Inherited Variants to Autism Spectrum Disorder (ASD) in a Family with 3 Affected Siblings.
Dhaliwal J, Qiao Y, Calli K, Martell S, Race S, Chijiwa C, Glodjo A, Jones S, Rajcan-Separovic E, Scherer SW, Lewis S
Tumor microRNA profile and prognostic value for lymph node metastasis in oral squamous cell carcinoma patients.
Liu KYP, Zhu SY, Brooks D, Bowlby R, Durham JS, Ma Y, Moore RA, Mungall AJ, Jones S, Poh CF
Management of PET diagnosed thyroid incidentalomas in British Columbia Canada: Critical importance of the PET report.
Wong J, Liu K, Siu C, Jones S, Sovka M, Wilson D, Wiseman SM
Molecular etiology of an indolent lymphoproliferative disorder determined by whole-genome sequencing.
Parker JD, Shen Y, Pleasance E, Li Y, Schein JE, Zhao Y, Moore R, Wegrzyn-Woltosz J, Savage KJ, Weng AP, Gascoyne RD, Jones S, Marra M, Laskin J, Karsan A
Genetic determinants of polymorphic DNA methylation at imprinted regulatory regions in humans
Principal investigators: Katsube, Brennan
Keywords: Bioinformatics; Computational Biology; Data Science; Epigenetics; Genetics; Genomics
Enhanced Population Cancer Care through Mainstream Genome Sequencing and Parent-of-Origin Detection
Principal investigators: Schrader, Kasmintan A
Keywords: Cancer; Cancer Prevention; Genetic Counselling; Gentic Testing; Germline; Hereditary; Risk-Reduction
Parent-of-Origin-Aware Genomic Analysis in Hereditary Cancer
Principal investigators: Schrader, Kasmintan A; Jones, Steven; Lansdorp, Peter M
Keywords: Cancer Susceptibility; Cascade Genetic Testing; Hereditary Cancer; Long Read Sequencing; Parent-Of-Origin; Strand-Seq; Whole Genome Sequencing
Evaluating the utility of long-read genome sequencing for uncovering causal genetic variation and epigenetic signatures of rare disease
Principal investigators: Jones, Steven
Keywords: Epigenetics; Genetic Testing; Genetic Variation; Genome Sequencing; Long-Read Sequencing; Rare Disease
Discovery of HPV-associated genomic alterations in cervical cancer
Principal investigators: Marra, Marco A
Keywords: Cervical Cancer; Dna Methylation; Gene Fusions; Genomics; Human Papillomavirus (Hpv); Long-Read Dna Sequencing; Structural Variants; Transcriptome; Viral Integration
Using machine learning to identify active and druggable pathways in primary and metastatic cancers through reference-free pathway analysis
Principal investigators: Keshavarz, Faeze
Keywords: Cancer Genomics; Cellular Pathway Modification; Classification; Machine Learning; Random Forest; Targeted Therapies; Transcriptomics
Using Natural Language Processing to Generate Text Summaries of Genomic Findings in Precision Oncology
Principal investigators: Reisle, Caralyn
Keywords: Cancer Genomics; Knowledge Representation; Natural Language Processing; Text Summarization
Long read DNA methylation sequencing for early detection of pancreatic adenocarcinoma
Principal investigators: Marra, Marco A; Jones, Steven
Keywords: Biomarker Discovery; Blood Samples; Development; Epigenomes; Epigenomics; Immunomodulation; Long Read Sequencing; Pancreatic
Canadian Epigenetics, Environment and Health Research Consortium Network Phase II
Principal investigators: Hirst, Martin; Bourque, Guillaume
Keywords: Dna; Epigenetics; Health; Knowledge Translation; Network; Outreach; Training
Genomic, Epigenomic, and Phenotypic Characterization of Oral Premalignant Fields for the Development of Actionable Prevention Strategies
Principal investigators: Poh, Catherine
Keywords: Genome-Wide Dna Methylation; Nanostring Technologies; Oral Cancer; Oral Premalignant Lesion; Pyrosequencing; Quantitative Tissue Pathology; Risk Models; Target Exome Sequencing; Transcriptomes Sequencing; Whole Genome Exome Sequencing
From CIHR, NSERC and SSHRC funding decisions: CIHR since 2008, NSERC since 1991 and SSHRC since 1998, including their latest published competition results.
Frequent collaborators
- Genome Sciences Centre
- Genetics
- Molecular Oncology
- Pathology and Laboratory Medicine
- Microbiology and Immunology
- Experimental Therapeutics
- Terry Fox Laboratory
- Other
Co-authors at University of British Columbia, colored by department. Thicker lines mean more shared papers; select anyone to open their profile and their own map.
Martin Hirst
Microbiology and Immunology
15 shared papers, latest 2025
Marco Marra
Genome Sciences Centre
13 shared papers, latest 2025
Samuel Aparicio
Molecular Oncology
5 shared papers, latest 2015
Inanc Birol
Genome Sciences Centre
4 shared papers, latest 2016
David Huntsman
Molecular Oncology
3 shared papers, latest 2015
Aly Karsan
Genome Sciences Centre
3 shared papers, latest 2016
Peter Watson
Faculty
2 shared papers, latest 2012
Jiarui Ding
Faculty
2 shared papers, latest 2013
Sohrab Shah
Faculty
2 shared papers, latest 2013
Christian Steidl
Experimental Therapeutics
2 shared papers, latest 2013
Connie Eaves
Terry Fox Laboratory
2 shared papers, latest 2008
Raymond Ng
Computer Science
1 shared papers, latest 2006
Sorana Morrissy
Medicine
1 shared papers, latest 2021
Eitan Prisman
Otolaryngology
1 shared papers, latest 2025
Ali Bashashati
Pathology and Laboratory Medicine
1 shared papers, latest 2012
Anna Tinker
Obstetrics and Gynecology
1 shared papers, latest 2015
Angela Brooks-Wilson
Pathology and Laboratory Medicine
1 shared papers, latest 2005
Freda Miller
Michael Smith Laboratories
1 shared papers, latest 2010
Marco Gallo
Biochemistry and Molecular Biology
1 shared papers, latest 2021
Yvonne Bombard
Institute of Health Policy, Management, and Evaluation
1 shared papers, latest 2024
Michael Kobor
Medical Genetics
1 shared papers, latest 2025
Kasmintan Schrader
Genetics
1 shared papers, latest 2015
Steven Jones
Genome Sciences Centre
1 shared papers, latest 2016
Guillaume Bourque
Human Genetics
1 shared papers, latest 2026
Stephen Lam
Faculty
1 shared papers, latest 2006
Wan Lam
Faculty
1 shared papers, latest 2025
Peter Leung
Obstetrics and Gynecology
1 shared papers, latest 2009
Gelareh Zadeh
Neurosurgery
1 shared papers, latest 2025
Nizar Bahlis
Hematology-Oncology
1 shared papers, latest 2021
Mathieu Lupien
Medical Biophysics
1 shared papers, latest 2021
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